SeqMonk 0.24.0

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    Specification

  • Version: 0.24.0
  • File size: 1.7 KB
  • File name: seqmonk_v0.24.0.dmg
  • Last update:
  • Platform: Mac OS X 10.5 or later
  • License: GPL
  • Price:FREE
  • Company: Simon Andrews (View more)

SeqMonk 0.24.0 Download Publisher Review:




Whats new in version 0.24.0:
• Added the ability to export all probe reports in GFF format
• Added a pipeline to detect antisense transcription from directional RNA-Seq libraries.
• Added a system which can provide immediate feedback to submitted crash reports if they're ones we've seen before and for which we can offer useful feedback.
• Added a chi-square based contingency test filter which is useful for bisulphite sequencing libraries (and possibly others too).
• Added an ID field to reports for cases where the name of a feature isn't useful or unique
• Added a probe length quantitation option
• Added a probe name filter which allows you to specify a large list of names and selects probes which match any of them
• Added an option to merge all transcripts in the RNA-Seq pipeline to create a single gene level measure of transcription
• Changed the active store parser to a visible stores parse to allow the easy re-import of multiple datasets in a single operation


Publisher review:
SeqMonk is a free and open source tool for viewing and analyzing mapped sequence data. 

SeqMonk was initially written to cope with remapping experiment data from next generation sequencers, but could be applied to any dataset consisting of a series of mapped genomic regions. 

SeqMonk allows you to visualise the positions of your mapped regions against an annotated genome and to quantify the data in order to make comparisons
between data sets.


Requirements:
  • Java 1.5 or later


Operating system:
Mac OS X 10.5 or later

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